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Type:

Workshop

Title:

Proteopedia: A powerful tool for Biomolecular Communication and a 3D Web Encyclopedia of Biomolecules

Date: 10 February, 2015
Time: 10:00 - 13:00
Location: PC room, Biology Department, Technion
Lecturer(s): Jaime Prilusky and Joel L. Sussman
Abstract:

Scientists and students are now able to access 3D images of biomacromolecules underlying
biological functions and disease. Rather than relying on text and 2D images to try to understand the
function of these structures, a collaborative website called Proteopedia1-3 provides a new resource
by linking written information and 3D structural information. The Proteopedia wiki web resource,
http://proteopedia.org, displays protein structures and other biomacromolecules in an interactive
format. Use of Proteopedia works on PCs, MACs, Linux computer, tablets like the iPad and
Android, without the need to install any additional software. The interactive images on each page
are surrounded by descriptive text containing hyperlinks that change the appearance of the adjacent 3D structure to reflect the concept discussed in the
text.

This in silico lab workshop will focus on:

- How to browse the > 100,000 pages in Proteopedia
- How to create ones own pages in Proteopedia

Related Documents
Click to Download Full abstract and references(2.4 Mb)
 
Type:

Workshops

Title:

AMBER 2015 Course

Date: 26 - 30 April, 2015
Location: Technion, Haifa, Israel
Lecturer(s): Ross Walker (RW), Adrian Roitberg (AR)
Abstract:

DAY1
Introduction to force fields and molecular dynamics

DAY2
Overview of AMBER Force Fields and Solvent Models.
Dealing with non-standard residues.

DAY3
An Introduction to QM/MM Calculations
Statistical Mechanics for Free Energy Calculations

DAY4
Enhanced sampling techniques,
Umbrella sampling and PMF calculations

DAY5
Lipid simulations

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